Research workbench
Crystal structure of an enolase from agrobacterium tumefaciens (efi target efi-502087) no mg
Analyse Crystal structure of an enolase from agrobacterium tumefaciens (efi target… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TJ4
- Type
- protein
- Length
- 720 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mandelate racemase
- UniProt
- Q7CU39
- Ligands
- PO4, CL
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Mandelate racemase | protein | 360 | 40% helix, 20% strand | Q7CU39 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 7 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- GOL · Glycerol · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 458 | 0.80 | 0.87 | 78 | PO4, GOL |
| 2 | 222 | 0.54 | 0.78 | 33 | GOL |
| 3 | 264 | 0.53 | 0.76 | 40 | empty |
| 4 | 171 | 0.53 | 0.79 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 1237 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 3TJ4 · Crystal structure of an enolase from agrobacterium tumefaciens (efi target efi-502087) no… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CU39
- Elsewhere: RCSB PDB 3TJ4 · PDBe 3TJ4 · UniProt Q7CU39
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.