Research workbench
Crystal structure of triosephosphate isomerase from rhipicephalus (boophilus) microplus.
Analyse Crystal structure of triosephosphate isomerase from rhipicephalus (boophilus)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TH6
- Type
- protein
- Length
- 485 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Triosephosphate isomerase
- EC
- 5.3.1.1
- UniProt
- A8B3A8
- Pockets
- 4 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Triosephosphate isomerase (EC 5.3.1.1) | protein | 244 | 43% helix, 16% strand | A8B3A8 |
| B | Triosephosphate isomerase (EC 5.3.1.1) | protein | 241 | 46% helix, 16% strand | A8B3A8 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.76 | 0.98 | 26 | empty |
| 2 | 96 | 0.47 | 0.81 | 23 | empty |
| 3 | 150 | 0.43 | 0.75 | 29 | empty |
| 4 | 74 | 0.40 | 0.79 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1676 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 3TH6 · Crystal structure of Triosephosphate isomerase from Rhipicephalus (Boophilus) microplus. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8B3A8
- Elsewhere: RCSB PDB 3TH6 · PDBe 3TH6 · UniProt A8B3A8
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