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GAP50 the anchor in the inner membrane complex of plasmodium

Analyse GAP50 the anchor in the inner membrane complex of plasmodium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TGH
Type: protein
Length: 315 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glideosome-associated protein 50
EC: 3.1.3.2
UniProt: Q8I2X3
Ligands: CO, SO4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glideosome-associated protein 50 (EC 3.1.3.2)	protein	315	25% helix, 28% strand	Q8I2X3

Ligands and binding sites

CO · Cobalt (II) ion · metal · 2 copies · chains A
SO4 · Sulfate ion · ion · 3 copies · chains A
DMS · Dimethyl sulfoxide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.36	0.77	15	DMS

Compared structures

3TGH · GAP50 the anchor in the inner membrane complex of Plasmodium · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8I2X3
Elsewhere: RCSB PDB 3TGH · PDBe 3TGH · UniProt Q8I2X3

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