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Crystal structure of matrix protein VP40 from ebola virus sudan

Analyse Crystal structure of matrix protein VP40 from ebola virus sudan in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TCQ
Type: protein
Length: 239 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Matrix protein VP40
UniProt: B0LPL6
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Matrix protein VP40	protein	239	19% helix, 38% strand	B0LPL6

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	512	0.69	0.79	38	empty

Compared structures

3TCQ · Crystal Structure of matrix protein VP40 from Ebola virus Sudan · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0LPL6
Elsewhere: RCSB PDB 3TCQ · PDBe 3TCQ · UniProt B0LPL6

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