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Crystal structure hp-nap from strain YS39 iron loaded (cocrystallization 5MM)

Analyse Crystal structure hp-nap from strain YS39 iron loaded (cocrystallization 5MM) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TA8
Type: protein
Length: 144 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neutrophil-activating protein
UniProt: G1UIZ3
Ligands: FE
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 78% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neutrophil-activating protein	protein	144	78% helix, 1% strand	G1UIZ3

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.47	0.77	18	EDO

Compared structures

3TA8 · Crystal structure HP-NAP from strain YS39 iron loaded (cocrystallization 5mM) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G1UIZ3
Elsewhere: RCSB PDB 3TA8 · PDBe 3TA8 · UniProt G1UIZ3

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