Research workbench
Crystal structure of apo BVU_3255, a methyltransferase from bacteroides vulgatus atcc 8482
Analyse Crystal structure of apo BVU_3255, a methyltransferase from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3T7R
- Type
- protein
- Length
- 496 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative methyltransferase
- UniProt
- A6L5C0
- Ligands
- 6PP
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative methyltransferase | protein | 248 | 46% helix, 23% strand | A6L5C0 |
Ligands and binding sites
- 6PP · 3-[(2Z)-3-methylpent-2-en-1-yl]benzene-1,2-diol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 424 | 0.68 | 0.80 | 52 | 6PP |
| 2 | 425 | 0.67 | 0.79 | 53 | 6PP |
Compared structures
- 3T7R · Crystal structure of apo BVU_3255, a methyltransferase from Bacteroides vulgatus ATCC 8482 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L5C0
- Elsewhere: RCSB PDB 3T7R · PDBe 3T7R · UniProt A6L5C0
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