Research workbench
Crystal structure of RTT107P (residues 820-1070)
Analyse Crystal structure of RTT107P (residues 820-1070) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3T7J
- Type
- protein
- Length
- 474 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulator of TY1 transposition protein 107
- UniProt
- P38850
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Regulator of TY1 transposition protein 107 | protein | 237 | 35% helix, 16% strand | P38850 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 861 | 0.71 | 0.76 | 85 | empty |
| 2 | 60 | 0.46 | 0.84 | 12 | empty |
| 3 | 66 | 0.42 | 0.81 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 500 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3T7J · Crystal structure of Rtt107p (residues 820-1070) · the same entry in another collection · chain A against A, TM-score 1.00
- P38850 · AlphaFold monomer V2.0 prediction for regulator of TY1 transposition protein 107 (P38850) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38850
- Elsewhere: RCSB PDB 3T7J · PDBe 3T7J · UniProt P38850
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