Research workbench
Crystal structure of truncated form of staphylococcal complement inhibitor D (scin-D) at 1.3 ångström
Analyse Crystal structure of truncated form of staphylococcal complement inhibitor D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3T47
- Type
- protein
- Length
- 141 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scin-D
- UniProt
- Q99WZ4
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scin-D | protein | 71 | 82% helix, 0% strand | Q99WZ4 |
| B | Scin-D | protein | 70 | 86% helix, 0% strand | Q99WZ4 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.46 | 0.75 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 526 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 3T47 · Crystal Structure of truncated form of Staphylococcal Complement Inhibitor D (SCIN-D) at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99WZ4
- Elsewhere: RCSB PDB 3T47 · PDBe 3T47 · UniProt Q99WZ4
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