Research workbench
Crystal structure of pseudomonas aeruginosa OCCK4 (opdl)
Analyse Crystal structure of pseudomonas aeruginosa OCCK4 (opdl) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3T0S
- Type
- protein
- Length
- 361 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Porin
- UniProt
- Q9HWP4
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Porin | protein | 361 | 0% helix, 63% strand | Q9HWP4 |
Ligands and binding sites
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 14 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 696 | 0.69 | 0.77 | 81 | empty |
| 2 | 197 | 0.49 | 0.76 | 33 | empty |
| 3 | 60 | 0.32 | 0.77 | 20 | empty |
| 4 | 54 | 0.29 | 0.75 | 14 | empty |
Compared structures
- 3T0S · Crystal structure of Pseudomonas aeruginosa OccK4 (OpdL) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HWP4
- Elsewhere: RCSB PDB 3T0S · PDBe 3T0S · UniProt Q9HWP4
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