Research workbench
Architectures of class-defining and specific domains of glutamyl-tRNA synthetase
Analyse Architectures of class-defining and specific domains of glutamyl-tRNA synthetase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GLN
- Type
- protein
- Length
- 468 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamyl-tRNA synthetase
- UniProt
- P27000
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamyl-tRNA synthetase | protein | 468 | 50% helix, 10% strand | P27000 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 352 | 0.64 | 0.79 | 38 | empty |
| 2 | 65 | 0.37 | 0.78 | 13 | empty |
Compared structures
- 1GLN · Architectures of class-defining and specific domains of glutamyl-tRNA synthetase · the same entry in another collection · chain A against A, TM-score 1.00
- P27000 · AlphaFold monomer V2.0 prediction for glutamate--tRNA ligase (P27000) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27000
- Elsewhere: RCSB PDB 1GLN · PDBe 1GLN · UniProt P27000
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