Research workbench
ISDX1, an anthrax hemophore
Analyse ISDX1, an anthrax hemophore in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SZ6
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved domain protein
- UniProt
- Q81L44
- Ligands
- CL
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Conserved domain protein | protein | 116 | 7% helix, 56% strand | Q81L44 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 465 | 0.66 | 0.78 | 44 | empty |
| 2 | 140 | 0.47 | 0.78 | 24 | GOL |
| 3 | 74 | 0.32 | 0.74 | 21 | empty |
| 4 | 77 | 0.32 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 516 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3SZ6 · IsdX1, an anthrax hemophore · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81L44
- Elsewhere: RCSB PDB 3SZ6 · PDBe 3SZ6 · UniProt Q81L44
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