Research workbench
Crystal structure of apo BT_2972, a methyltransferase from bacteroides thetaiotaomicron
Analyse Crystal structure of apo BT_2972, a methyltransferase from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SVZ
- Type
- protein
- Length
- 490 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative methyltransferase
- UniProt
- Q8A3I2
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative methyltransferase | protein | 245 | 43% helix, 23% strand | Q8A3I2 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 439 | 0.71 | 0.81 | 44 | empty |
| 2 | 471 | 0.70 | 0.80 | 45 | empty |
| 3 | 191 | 0.53 | 0.78 | 28 | empty |
| 4 | 184 | 0.51 | 0.78 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 928 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 3SVZ · Crystal structure of apo BT_2972, a methyltransferase from Bacteroides thetaiotaomicron · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A3I2
- Elsewhere: RCSB PDB 3SVZ · PDBe 3SVZ · UniProt Q8A3I2
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