Research workbench
Crystal structure of an endosomal snare core complex
Analyse Crystal structure of an endosomal snare core complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GL2
- Type
- protein
- Length
- 229 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endobrevin; Syntaxin 7; Vesicle transport V-snare protein VTI1-like 1; Syntaxin 8
- UniProt
- Q9WUF4, O70439, O88384, Q9Z2Q7
Structure
x-ray diffraction · 4 distinct chains · 94% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endobrevin | protein | 54 | 94% helix, 0% strand | Q9WUF4 |
| B | Syntaxin 7 | protein | 60 | 95% helix, 0% strand | O70439 |
| C | Vesicle transport V-snare protein VTI1-like 1 | protein | 60 | 93% helix, 0% strand | O88384 |
| D | Syntaxin 8 | protein | 55 | 95% helix, 0% strand | Q9Z2Q7 |
Interfaces
6 interfaces between chains.
- B–C · 1452 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 1396 Ų buried · 7 hydrogen bonds · protein-protein
- A–D · 1262 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 1234 Ų buried · 14 hydrogen bonds · protein-protein
- B–D · 399 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1GL2 · Crystal structure of an endosomal SNARE core complex · the same entry in another collection · chain D against D, TM-score 1.00
- Q9Z2Q7 · AlphaFold monomer V2.0 prediction for syntaxin-8 (Q9Z2Q7) · a predicted model of the same protein · chain D against A, TM-score 0.92
- O88384 · AlphaFold monomer V2.0 prediction for vesicle transport through interaction with T-snares… · a predicted model of the same protein · chain C against A, TM-score 0.92
- Q9WUF4 · AlphaFold monomer V2.0 prediction for vesicle-associated membrane protein 8 (Q9WUF4) · a predicted model of the same protein · chain A against A, TM-score 0.90
- O70439 · AlphaFold monomer V2.0 prediction for syntaxin-7 (O70439) · a predicted model of the same protein · chain B against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WUF4
- Every structure of UniProt O70439
- Every structure of UniProt O88384
- Every structure of UniProt Q9Z2Q7
- Elsewhere: RCSB PDB 1GL2 · PDBe 1GL2 · UniProt Q9WUF4 · UniProt O70439 · UniProt O88384 · UniProt Q9Z2Q7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.