Research workbench
Crystal structure of necrosis and ethylene inducing protein 2 from the causal agent of COCOA'S witches broom disease
Analyse Crystal structure of necrosis and ethylene inducing protein 2 from the causal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ST1
- Type
- protein
- Length
- 212 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Necrosis-and ethylene-inducing protein
- UniProt
- A5H7H0
- Ligands
- ZN, NA
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Necrosis-and ethylene-inducing protein | protein | 212 | 16% helix, 40% strand | A5H7H0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.50 | 0.82 | 23 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3ST1 · Crystal structure of Necrosis and Ethylene inducing Protein 2 from the causal agent of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5H7H0
- Elsewhere: RCSB PDB 3ST1 · PDBe 3ST1 · UniProt A5H7H0
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