Research workbench
Architecture of the flagellar rotor
Analyse Architecture of the flagellar rotor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SOH
- Type
- protein
- Length
- 536 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar motor switch protein flim; Flagellar motor switch protein flig
- UniProt
- Q9WZE6, Q9WY63
- Pockets
- 8 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Flagellar motor switch protein flim | protein | 188 | 41% helix, 26% strand | Q9WZE6 |
| B, D | Flagellar motor switch protein flig | protein | 80 | 65% helix, 0% strand | Q9WY63 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 731 | 0.79 | 0.83 | 80 | empty |
| 2 | 209 | 0.62 | 0.82 | 29 | empty |
| 3 | 92 | 0.56 | 0.85 | 17 | empty |
| 4 | 54 | 0.56 | 0.89 | 16 | empty |
| 5 | 81 | 0.56 | 0.86 | 15 | empty |
Interfaces
5 interfaces between chains.
- C–D · 783 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 759 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 622 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 385 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 364 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3SOH · Architecture of the Flagellar Rotor · the same entry in another collection · chain D against D, TM-score 1.00
- Q9WZE6 · AlphaFold monomer V2.0 prediction for flagellar motor switch protein flim (Q9WZE6) · a predicted model of the same protein · chain C against A, TM-score 0.97
- Q9WY63 · AlphaFold monomer V2.0 prediction for flagellar motor switch protein flig (Q9WY63) · a predicted model of the same protein · chain D against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZE6
- Every structure of UniProt Q9WY63
- Elsewhere: RCSB PDB 3SOH · PDBe 3SOH · UniProt Q9WZE6 · UniProt Q9WY63
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