Research workbench
Crystal structure of a putative susd-like carbohydrate binding protein (BT_1439) from bacteroides thetaiotaomicron vpi-5482 at 1.88 a resolution
Analyse Crystal structure of a putative susd-like carbohydrate binding protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SNX
- Type
- protein
- Length
- 910 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative susd-like carbohydrate binding protein
- UniProt
- Q8A7T5
- Pockets
- 10 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative susd-like carbohydrate binding protein | protein | 455 | 45% helix, 9% strand | Q8A7T5 |
Ligands and binding sites
- PEG · Di(hydroxyethyl)ether · additive · 4 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.80 | 0.98 | 23 | EDO |
| 2 | 104 | 0.80 | 0.99 | 23 | EDO |
| 3 | 100 | 0.70 | 0.93 | 23 | empty |
| 4 | 96 | 0.69 | 0.93 | 22 | empty |
| 5 | 358 | 0.68 | 0.81 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 594 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 26 modified (engineered).
Compared structures
- 3SNX · Crystal structure of a PUTATIVE SUSD-LIKE CARBOHYDRATE BINDING PROTEIN (BT_1439) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A7T5
- Elsewhere: RCSB PDB 3SNX · PDBe 3SNX · UniProt Q8A7T5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.