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Crystal structure of a putative oligoendopeptidase F from bacillus anthracis str. ames
Analyse Crystal structure of a putative oligoendopeptidase F from bacillus anthracis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SKS
- Type
- protein
- Length
- 544 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative oligoendopeptidase F
- UniProt
- Q81TD1
- Ligands
- ZN, PO4
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative oligoendopeptidase F | protein | 544 | 71% helix, 4% strand | Q81TD1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 984 | 0.78 | 0.80 | 76 | PO4, ZN |
| 2 | 820 | 0.72 | 0.77 | 82 | PO4 |
| 3 | 58 | 0.33 | 0.77 | 15 | empty |
| 4 | 61 | 0.32 | 0.76 | 12 | empty |
Compared structures
- 3SKS · Crystal structure of a putative oligoendopeptidase F from Bacillus anthracis str. Ames · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81TD1
- Elsewhere: RCSB PDB 3SKS · PDBe 3SKS · UniProt Q81TD1
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