Research workbench
Crystal structure of conserved unkown function protein CV_1783 from chromobacterium violaceum atcc 12472
Analyse Crystal structure of conserved unkown function protein CV_1783 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SJR
- Type
- protein
- Length
- 470 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q7NX46
- Pockets
- 11 · best druggability 0.67
Structure
x-ray diffraction · 4 distinct chains · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 126 | 71% helix, 0% strand | Q7NX46 |
| B | Uncharacterized protein | protein | 117 | 80% helix, 0% strand | Q7NX46 |
| C | Uncharacterized protein | protein | 117 | 79% helix, 0% strand | Q7NX46 |
| D | Uncharacterized protein | protein | 110 | 82% helix, 0% strand | Q7NX46 |
Pockets
11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.67 | 0.94 | 20 | empty |
| 2 | 326 | 0.59 | 0.77 | 41 | empty |
| 3 | 173 | 0.52 | 0.79 | 27 | empty |
| 4 | 156 | 0.46 | 0.76 | 23 | empty |
| 5 | 68 | 0.46 | 0.82 | 23 | empty |
Interfaces
6 interfaces between chains.
- A–B · 2488 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 2476 Ų buried · 4 hydrogen bonds · protein-protein
- A–D · 398 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 157 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 39 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3SJR · Crystal structure of conserved unkown function protein CV_1783 from Chromobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7NX46
- Elsewhere: RCSB PDB 3SJR · PDBe 3SJR · UniProt Q7NX46
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