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Crystal structure of DNA ligase a brct domain deleted mutant of mycobacterium tuberculosis

Analyse Crystal structure of DNA ligase a brct domain deleted mutant of mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3SGI
Type: protein
Length: 408 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA ligase
EC: 6.5.1.2
UniProt: P63973
Ligands: AMP
Pockets: 3 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA ligase (EC 6.5.1.2)	protein	408	20% helix, 22% strand	P63973

Ligands and binding sites

AMP · Adenosine monophosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1122	0.86	0.87	108	AMP
2	52	0.52	0.88	14	empty
3	58	0.29	0.75	14	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

3SGI · Crystal structure of DNA ligase A BRCT domain deleted mutant of Mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63973
Elsewhere: RCSB PDB 3SGI · PDBe 3SGI · UniProt P63973

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