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Crystal structure of a putative sugar binding protein (BT_4411) from bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution

Analyse Crystal structure of a putative sugar binding protein (BT_4411) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3SEE
Type: protein
Length: 214 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical sugar binding protein
UniProt: Q89ZG6
Ligands: NA
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical sugar binding protein	protein	214	3% helix, 42% strand	Q89ZG6

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.33	0.76	19	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3SEE · Crystal structure of a putative sugar binding protein (BT_4411) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q89ZG6
Elsewhere: RCSB PDB 3SEE · PDBe 3SEE · UniProt Q89ZG6

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