Research workbench
Structure of a nitrilotriacetate monooxygenase from burkholderia pseudomallei
Analyse Structure of a nitrilotriacetate monooxygenase from burkholderia pseudomallei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SDO
- Type
- protein
- Length
- 839 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrilotriacetate monooxygenase
- EC
- 1.14.13.-
- UniProt
- Q3JIP8
- Pockets
- 7 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrilotriacetate monooxygenase (EC 1.14.13.-) | protein | 443 | 44% helix, 12% strand | Q3JIP8 |
| B | Nitrilotriacetate monooxygenase (EC 1.14.13.-) | protein | 396 | 40% helix, 14% strand | Q3JIP8 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 919 | 0.80 | 0.82 | 143 | empty |
| 2 | 284 | 0.58 | 0.78 | 49 | empty |
| 3 | 132 | 0.40 | 0.74 | 23 | empty |
| 4 | 75 | 0.31 | 0.74 | 14 | empty |
| 5 | 66 | 0.30 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2831 Ų buried · 53 hydrogen bonds · protein-protein
Compared structures
- 3SDO · Structure of a Nitrilotriacetate monooxygenase from Burkholderia pseudomallei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3JIP8
- Elsewhere: RCSB PDB 3SDO · PDBe 3SDO · UniProt Q3JIP8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.