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Crystal structure of a putative 6-phosphogluconolactonase (BF1038) from bacteroides fragilis nctc 9343 at 1.50 a resolution

Analyse Crystal structure of a putative 6-phosphogluconolactonase (BF1038) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3SCY
Type: protein
Length: 356 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical bacterial 6-phosphogluconolactonase
UniProt: Q5LGG4
Ligands: UNL, MG, NA
Pockets: 1 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical bacterial 6-phosphogluconolactonase	protein	356	1% helix, 53% strand	Q5LGG4

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	441	0.62	0.76	45	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3SCY · Crystal structure of a putative 6-phosphogluconolactonase (BF1038) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LGG4
Elsewhere: RCSB PDB 3SCY · PDBe 3SCY · UniProt Q5LGG4

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