Research workbench

Crystal structure of a member of DUF4221 family (BVU_1028) from bacteroides vulgatus atcc 8482 at 1.75 a resolution

Analyse Crystal structure of a member of DUF4221 family (BVU_1028) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3S9J
Type: protein
Length: 362 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Member of DUF4221 family
UniProt: A6KZ57
Ligands: NA
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Member of DUF4221 family	protein	362	6% helix, 45% strand	A6KZ57

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A
FMT · Formic acid · additive · 13 copies · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	259	0.71	0.86	28	FMT
2	491	0.65	0.77	53	FMT, GOL
3	71	0.55	0.87	19	FMT, GOL

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3S9J · Crystal structure of a member of duf4221 family (BVU_1028) from Bacteroides vulgatus atcc… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6KZ57
Elsewhere: RCSB PDB 3S9J · PDBe 3S9J · UniProt A6KZ57

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.