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Crystal structure of 3B5H10

Analyse Crystal structure of 3B5H10 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3S96
Type: protein
Length: 843 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3B5H10 Fab heavy chain; 3B5H10 Fab light chain
Pockets: 14 · best druggability 0.56

Structure

x-ray diffraction · 4 distinct chains · 8% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	3B5H10 Fab heavy chain	protein	218	8% helix, 50% strand	—
B	3B5H10 Fab light chain	protein	204	8% helix, 56% strand	—
C	3B5H10 Fab heavy chain	protein	218	8% helix, 48% strand	—
D	3B5H10 Fab light chain	protein	203	8% helix, 55% strand	—

Pockets

14 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.56	0.80	34	empty
2	230	0.46	0.73	40	empty
3	169	0.45	0.75	27	empty
4	113	0.42	0.77	24	empty
5	110	0.40	0.76	15	empty

Interfaces

3 interfaces between chains.

A–B · 1601 Å² buried · 5 hydrogen bonds · protein-protein
C–D · 1517 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 430 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

3S96 · Crystal structure of 3B5H10 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3S96 · PDBe 3S96

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