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Low resolution structure of stnv complexed with RNA

Analyse Low resolution structure of stnv complexed with RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3S4G
Type: protein + RNA
Length: 191 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein; RNA (5'-R(P*AP*AP*A)-3'); RNA (5'-R(P*UP*UP*UP*U)-3')
UniProt: P03606
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 3 distinct chains · 11% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	184	11% helix, 48% strand	P03606
B	RNA (5'-R(PAPAP*A)-3')	rna	3	—	—
C	RNA (5'-R(PUPUPUPU)-3')	rna	4	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.29	0.73	11	empty

Interfaces

2 interfaces between chains.

A–C · 254 Å² buried · 7 hydrogen bonds · protein-nucleic
B–C · 158 Å² buried · 8 hydrogen bonds · nucleic-nucleic

Compared structures

3S4G · Low Resolution Structure of STNV complexed with RNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03606
Elsewhere: RCSB PDB 3S4G · PDBe 3S4G · UniProt P03606

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