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Apis mellifera OBP14 in complex with the fluorescent probe 1-N- phenylnaphthylamine (npn)

Analyse Apis mellifera OBP14 in complex with the fluorescent probe 1-N… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3S0B
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: OBP14
UniProt: Q1W640
Ligands: FNA
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 66% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	OBP14	protein	119	66% helix, 2% strand	Q1W640

Ligands and binding sites

FNA · N-phenylnaphthalen-1-amine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.79	0.98	24	FNA

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3S0B · Apis mellifera OBP14 in complex with the fluorescent probe 1-N-phenylnaphthylamine (NPN) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1W640
Elsewhere: RCSB PDB 3S0B · PDBe 3S0B · UniProt Q1W640

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