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The crystal structure of the periplasmic domain of helicobacter pylori motb (residues 103-256)

Analyse The crystal structure of the periplasmic domain of helicobacter pylori motb… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3S02
Type: protein
Length: 293 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Motility protein B
UniProt: P56427
Pockets: 3 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Motility protein B	protein	146	40% helix, 25% strand	P56427
B	Motility protein B	protein	147	40% helix, 20% strand	P56427

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	399	0.70	0.82	52	empty
2	160	0.54	0.80	20	empty
3	75	0.35	0.76	20	empty

Interfaces

1 interface between chains.

A–B · 1312 Å² buried · 26 hydrogen bonds · protein-protein

Compared structures

3S02 · The crystal structure of the periplasmic domain of Helicobacter pylori MotB (residues… · the same entry in another collection · chain A against A, TM-score 1.00
P56427 · AlphaFold monomer V2.0 prediction for motility protein B (P56427) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56427
Elsewhere: RCSB PDB 3S02 · PDBe 3S02 · UniProt P56427

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