Research workbench
Lactococcal oppa complexed with slsqslsqs
Analyse Lactococcal oppa complexed with slsqslsqs in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RYB
- Type
- protein
- Length
- 572 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligopeptide-binding protein oppa; Oligopeptide
- UniProt
- A2RJ53
- Pockets
- 5 · best druggability 0.90
Structure
x-ray diffraction · 2 distinct chains · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oligopeptide-binding protein oppa | protein | 563 | 29% helix, 23% strand | A2RJ53 |
| B | Oligopeptide | protein | 9 | 0% helix, 22% strand | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1128 | 0.90 | 0.91 | 106 | empty |
| 2 | 68 | 0.73 | 0.97 | 20 | empty |
| 3 | 115 | 0.44 | 0.78 | 21 | empty |
| 4 | 150 | 0.41 | 0.74 | 29 | empty |
| 5 | 78 | 0.40 | 0.79 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 930 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 3RYB · Lactococcal OppA complexed with SLSQSLSQS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2RJ53
- Elsewhere: RCSB PDB 3RYB · PDBe 3RYB · UniProt A2RJ53
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