Research workbench
Crystal structure of mouse apolipoprotein a-I binding protein in complex with thymine.
Analyse Crystal structure of mouse apolipoprotein a-I binding protein in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RO7
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apolipoprotein a-I-binding protein
- UniProt
- Q8K4Z3
- Ligands
- TDR, SO4
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apolipoprotein a-I-binding protein | protein | 233 | 38% helix, 16% strand | Q8K4Z3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.72 | 0.88 | 31 | TDR, SO4 |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3RO7 · Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Thymine. · the same entry in another collection · chain A against A, TM-score 1.00
- Q8K4Z3 · AlphaFold monomer V2.0 prediction for NAD(P)H-hydrate epimerase (Q8K4Z3) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8K4Z3
- Elsewhere: RCSB PDB 3RO7 · PDBe 3RO7 · UniProt Q8K4Z3
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