Research workbench
Crystal structure of GRASP55 grasp domain (residues 7-208)
Analyse Crystal structure of GRASP55 grasp domain (residues 7-208) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RLE
- Type
- protein
- Length
- 202 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Golgi reassembly-stacking protein 2
- UniProt
- Q9H8Y8
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Golgi reassembly-stacking protein 2 | protein | 202 | 15% helix, 33% strand | Q9H8Y8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 245 | 0.59 | 0.79 | 27 | empty |
| 2 | 58 | 0.30 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3RLE · Crystal Structure of GRASP55 GRASP domain (residues 7-208) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H8Y8 · AlphaFold monomer V2.0 prediction for golgi reassembly-stacking protein 2 (Q9H8Y8) · a predicted model of the same protein · chain A against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H8Y8
- Elsewhere: RCSB PDB 3RLE · PDBe 3RLE · UniProt Q9H8Y8
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