Research workbench
Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
Analyse Design of a binding scaffold based on variable lymphocyte receptors of jawless… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RFJ
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Internalin B, repeat modules, variable lymphocyte receptor
- UniProt
- D2P9A6, Q6E4K6
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Internalin B, repeat modules, variable lymphocyte receptor | protein | 268 | 18% helix, 14% strand | D2P9A6, Q6E4K6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3RFJ · Design of a binding scaffold based on variable lymphocyte receptors of jawless… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2P9A6
- Every structure of UniProt Q6E4K6
- Elsewhere: RCSB PDB 3RFJ · PDBe 3RFJ · UniProt D2P9A6 · UniProt Q6E4K6
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