Research workbench
Crystal structure of MLL3558 protein from rhizobium loti. northeast structural genomics consortium target id MLR403
Analyse Crystal structure of MLL3558 protein from rhizobium loti. northeast structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RD6
- Type
- protein
- Length
- 279 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MLL3558 protein
- UniProt
- Q98FZ2
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MLL3558 protein | protein | 144 | 24% helix, 49% strand | Q98FZ2 |
| B | MLL3558 protein | protein | 135 | 20% helix, 44% strand | Q98FZ2 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.66 | 0.82 | 36 | empty |
| 2 | 229 | 0.58 | 0.79 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1152 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 3RD6 · Crystal structure of Mll3558 protein from Rhizobium loti. Northeast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q98FZ2
- Elsewhere: RCSB PDB 3RD6 · PDBe 3RD6 · UniProt Q98FZ2
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