Research workbench
RAD60 SLD2 UBC9 complex
Analyse RAD60 SLD2 UBC9 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RCZ
- Type
- protein
- Length
- 229 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair protein RAD60; Sumo-conjugating enzyme UBC9
- EC
- 6.3.2.-
- UniProt
- Q9USX3, P40984
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair protein RAD60 | protein | 74 | 20% helix, 35% strand | Q9USX3 |
| B | Sumo-conjugating enzyme UBC9 (EC 6.3.2.-) | protein | 155 | 34% helix, 20% strand | P40984 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.46 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 629 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3RCZ · Rad60 SLD2 Ubc9 Complex · the same entry in another collection · chain A against A, TM-score 1.00
- P40984 · AlphaFold monomer V2.0 prediction for sumo-conjugating enzyme UBC9 (P40984) · a predicted model of the same protein · chain B against A, TM-score 0.99
- Q9USX3 · AlphaFold monomer V2.0 prediction for DNA repair protein RAD60 (Q9USX3) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9USX3
- Every structure of UniProt P40984
- Elsewhere: RCSB PDB 3RCZ · PDBe 3RCZ · UniProt Q9USX3 · UniProt P40984
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.