Research workbench
Crystal structure of methionyl-tRNA formyltransferase from yersinia pestis complexed with L-methionine
Analyse Crystal structure of methionyl-tRNA formyltransferase from yersinia pestis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3R8X
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methionyl-tRNA formyltransferase
- EC
- 2.1.2.9
- UniProt
- Q8ZJ80
- Ligands
- MET, MOE
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionyl-tRNA formyltransferase (EC 2.1.2.9) | protein | 309 | 28% helix, 28% strand | Q8ZJ80 |
Ligands and binding sites
- MET · Methionine · ligand · chains A
- MOE · Methoxy-ethoxyl · ligand · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 369 | 0.61 | 0.77 | 41 | MET, GOL |
Compared structures
- 3R8X · Crystal Structure of Methionyl-tRNA Formyltransferase from Yersinia pestis complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8ZJ80 · AlphaFold monomer V2.0 prediction for methionyl-tRNA formyltransferase (Q8ZJ80) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZJ80
- Elsewhere: RCSB PDB 3R8X · PDBe 3R8X · UniProt Q8ZJ80
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.