Research workbench
Homing endonuclease I-BTH0305I catalytic domain
Analyse Homing endonuclease I-BTH0305I catalytic domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3R3P
- Type
- protein
- Length
- 195 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mobile intron protein
- UniProt
- A7KV39
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mobile intron protein | protein | 97 | 47% helix, 27% strand | A7KV39 |
| B | Mobile intron protein | protein | 98 | 47% helix, 27% strand | A7KV39 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 207 | 0.51 | 0.77 | 30 | empty |
| 2 | 94 | 0.48 | 0.81 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1107 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 3R3P · Homing Endonuclease I-Bth0305I Catalytic Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7KV39
- Elsewhere: RCSB PDB 3R3P · PDBe 3R3P · UniProt A7KV39
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.