Research workbench
Possible transcriptional regulator from methanosarcina mazei GO1 (gi 21227196)
Analyse Possible transcriptional regulator from methanosarcina mazei GO1 (gi 21227196) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3R0A
- Type
- protein
- Length
- 243 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative transcriptional regulator
- UniProt
- Q8PXX2
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative transcriptional regulator | protein | 120 | 53% helix, 20% strand | Q8PXX2 |
| B | Putative transcriptional regulator | protein | 123 | 55% helix, 19% strand | Q8PXX2 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.57 | 0.86 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1859 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 3R0A · Possible transcriptional regulator from Methanosarcina mazei Go1 (gi 21227196) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PXX2
- Elsewhere: RCSB PDB 3R0A · PDBe 3R0A · UniProt Q8PXX2
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