Research workbench
3D structure of ferric methanosarcina acetivorans protoglobin Y61W mutant in aquomet form
Analyse 3D structure of ferric methanosarcina acetivorans protoglobin Y61W mutant in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QZZ
- Type
- protein
- Length
- 190 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methanosarcina acetivorans protoglobin
- UniProt
- Q8TLY9
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methanosarcina acetivorans protoglobin | protein | 190 | 62% helix, 1% strand | Q8TLY9 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 363 | 0.86 | 0.95 | 39 | HEM |
Compared structures
- 3QZZ · 3D Structure of Ferric Methanosarcina Acetivorans Protoglobin Y61W mutant in Aquomet form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TLY9
- Elsewhere: RCSB PDB 3QZZ · PDBe 3QZZ · UniProt Q8TLY9
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