Research workbench
Crystal structure of saccharomyces cerevisiae zeta-crystallin-like quinone oxidoreductase ZTA1
Analyse Crystal structure of saccharomyces cerevisiae zeta-crystallin-like quinone… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QWA
- Type
- protein
- Length
- 663 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable quinone oxidoreductase
- EC
- 1.6.5.5
- UniProt
- P38230
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable quinone oxidoreductase (EC 1.6.5.5) | protein | 331 | 33% helix, 28% strand | P38230 |
| B | Probable quinone oxidoreductase (EC 1.6.5.5) | protein | 332 | 34% helix, 28% strand | P38230 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 822 | 0.79 | 0.82 | 55 | empty |
| 2 | 956 | 0.76 | 0.79 | 64 | empty |
| 3 | 297 | 0.55 | 0.75 | 32 | empty |
| 4 | 65 | 0.33 | 0.76 | 19 | empty |
| 5 | 58 | 0.28 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1240 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 3QWA · Crystal structure of Saccharomyces cerevisiae Zeta-crystallin-like qui oxidoreductase Zta1 · the same entry in another collection · chain A against A, TM-score 1.00
- P38230 · AlphaFold monomer V2.0 prediction for probable quinone oxidoreductase (P38230) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38230
- Elsewhere: RCSB PDB 3QWA · PDBe 3QWA · UniProt P38230
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