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Structure of the bombyx mori lysozyme

Analyse Structure of the bombyx mori lysozyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1GD6
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: P48816
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	119	42% helix, 12% strand	P48816

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	90	0.36	0.75	16	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1GD6 · Structure of the bombyx mori lysozyme · the same entry in another collection · chain A against A, TM-score 1.00
P48816 · AlphaFold monomer V2.0 prediction for lysozyme (P48816) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48816
Elsewhere: RCSB PDB 1GD6 · PDBe 1GD6 · UniProt P48816

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