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Crystal structure of ripc from yersinia pestis

Analyse Crystal structure of ripc from yersinia pestis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3QLL
Type: protein
Length: 645 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Citrate lyase
UniProt: Q9ZC38
Pockets: 6 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Citrate lyase	protein	215	47% helix, 18% strand	Q9ZC38

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	222	0.66	0.84	27	empty
2	187	0.66	0.85	34	empty
3	179	0.51	0.78	24	empty
4	171	0.47	0.76	28	empty
5	147	0.45	0.76	28	empty

Interfaces

3 interfaces between chains.

A–B · 514 Å² buried · 1 hydrogen bond · protein-protein
B–C · 465 Å² buried · 1 hydrogen bond · protein-protein
A–C · 464 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

3QLL · Crystal Structure of RipC from Yersinia pestis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZC38
Elsewhere: RCSB PDB 3QLL · PDBe 3QLL · UniProt Q9ZC38

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