Research workbench
Crystal structure of symerythrin from cyanophora paradoxa, reduced with dithionite
Analyse Crystal structure of symerythrin from cyanophora paradoxa, reduced with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QHC
- Type
- protein
- Length
- 358 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Symerythrin
- UniProt
- P48329
- Ligands
- FE
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Symerythrin | protein | 179 | 79% helix, 0% strand | P48329 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.55 | 0.83 | 28 | empty |
| 2 | 204 | 0.54 | 0.78 | 35 | empty |
| 3 | 159 | 0.42 | 0.74 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 1249 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 3QHC · Crystal structure of Symerythrin from Cyanophora paradoxa, reduced with dithionite · the same entry in another collection · chain A against A, TM-score 1.00
- P48329 · AlphaFold monomer V2.0 prediction for uncharacterized protein in peta-psam intergenic… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48329
- Elsewhere: RCSB PDB 3QHC · PDBe 3QHC · UniProt P48329
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.