Research workbench
Structure of proteasome tether
Analyse Structure of proteasome tether in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3Q5W
- Type
- protein
- Length
- 397 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein CUT8
- UniProt
- P38937
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein CUT8 | protein | 198 | 63% helix, 1% strand | P38937 |
| B | Protein CUT8 | protein | 199 | 65% helix, 1% strand | P38937 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.57 | 0.83 | 21 | empty |
| 2 | 114 | 0.52 | 0.82 | 20 | empty |
| 3 | 53 | 0.30 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 3043 Ų buried · 31 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38937
- Elsewhere: RCSB PDB 3Q5W · PDBe 3Q5W · UniProt P38937
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