Research workbench

Structural analysis of a class I PREQ1 riboswitch aptamer in the metabolite-bound state

Analyse Structural analysis of a class I PREQ1 riboswitch aptamer in the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3Q50
Type: RNA
Length: 33 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PREQ1 riboswitch
Ligands: PRF, SO4
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PREQ1 riboswitch	rna	33	—	—

Ligands and binding sites

PRF · 7-deaza-7-aminomethyl-guanine · ligand · chains A
SO4 · Sulfate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.39	0.76	15	PRF, SO4

Compared structures

3Q50 · Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3Q50 · PDBe 3Q50

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.