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Crystal structure of SGLIPR1 soaked with zinc chloride

Analyse Crystal structure of SGLIPR1 soaked with zinc chloride in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3Q2R
Type: protein
Length: 192 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glioma pathogenesis-related protein 1
UniProt: P48060
Ligands: ZN
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glioma pathogenesis-related protein 1	protein	192	27% helix, 22% strand	P48060

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.25	0.73	15	empty

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

3Q2R · crystal structure of sGLIPR1 soaked with zinc chloride · the same entry in another collection · chain A against A, TM-score 1.00
P48060 · AlphaFold monomer V2.0 prediction for glioma pathogenesis-related protein 1 (P48060) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48060
Elsewhere: RCSB PDB 3Q2R · PDBe 3Q2R · UniProt P48060

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