Research workbench
Crystal structure of a probable acetyltransferases (gnat family) from chromobacterium violaceum atcc 12472
Analyse Crystal structure of a probable acetyltransferases (gnat family) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PZJ
- Type
- protein
- Length
- 381 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable acetyltransferases
- EC
- 2.3.1.-
- UniProt
- Q7NX87
- Ligands
- NA
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable acetyltransferases (EC 2.3.1.-) | protein | 198 | 32% helix, 31% strand | Q7NX87 |
| B | Probable acetyltransferases (EC 2.3.1.-) | protein | 183 | 32% helix, 34% strand | Q7NX87 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1194 | 0.78 | 0.80 | 111 | EDO |
Interfaces
1 interface between chains.
- A–B · 1595 Ų buried · 33 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3PZJ · Crystal structure of a probable acetyltransferases (GNAT family) from Chromobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7NX87
- Elsewhere: RCSB PDB 3PZJ · PDBe 3PZJ · UniProt Q7NX87
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