Research workbench
Rta in complex with N-(furanylmethyl)-7-carbamoyl-pterin
Analyse Rta in complex with N-(furanylmethyl)-7-carbamoyl-pterin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PX9
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Preproricin
- UniProt
- D6MWP9
- Ligands
- JP3
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Preproricin | protein | 258 | 40% helix, 22% strand | D6MWP9 |
Ligands and binding sites
- JP3 · 2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide · ligand · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 237 | 0.61 | 0.81 | 37 | JP3 |
| 2 | 51 | 0.34 | 0.78 | 12 | empty |
Compared structures
- 3PX9 · RTA in complex with N-(furanylmethyl)-7-carbamoyl-pterin · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6MWP9
- Elsewhere: RCSB PDB 3PX9 · PDBe 3PX9 · UniProt D6MWP9
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