Research workbench
Rta in complex with 7-carboxy-pterin
Analyse Rta in complex with 7-carboxy-pterin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PX8
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Preproricin
- UniProt
- D6MWP9
- Ligands
- JP2
- Pockets
- 3 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Preproricin | protein | 258 | 41% helix, 22% strand | D6MWP9 |
Ligands and binding sites
- JP2 · 2-amino-4-oxo-1,4-dihydropteridine-7-carboxylic acid · ligand · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.56 | 0.82 | 26 | empty |
| 2 | 73 | 0.45 | 0.82 | 16 | JP2 |
| 3 | 50 | 0.33 | 0.77 | 12 | empty |
Compared structures
- 3PX8 · RTA in complex with 7-carboxy-pterin · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6MWP9
- Elsewhere: RCSB PDB 3PX8 · PDBe 3PX8 · UniProt D6MWP9
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