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Crystal structure of NKP30 ligand B7-H6

Analyse Crystal structure of NKP30 ligand B7-H6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3PV7
Type: protein
Length: 212 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ig-like domain-containing protein DKFZP686O24166/DKFZP686I21167
UniProt: Q68D85
Ligands: NAG

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ig-like domain-containing protein DKFZP686O24166/DKFZP686I21167	protein	212	3% helix, 54% strand	Q68D85

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 glycan, 2 disulfide (N-glycosylation, disulfide).

Compared structures

3PV7 · Crystal structure of NKp30 ligand B7-H6 · the same entry in another collection · chain A against A, TM-score 1.00
Q68D85 · AlphaFold monomer V2.0 prediction for natural cytotoxicity triggering receptor 3 ligand 1… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q68D85
Elsewhere: RCSB PDB 3PV7 · PDBe 3PV7 · UniProt Q68D85

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