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Crystal structure of P domain dimer of norovirus VA207
Analyse Crystal structure of P domain dimer of norovirus VA207 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PUM
- Type
- protein
- Length
- 593 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid
- UniProt
- Q91H09
- Pockets
- 6 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid | protein | 296 | 5% helix, 38% strand | Q91H09 |
| B | Capsid | protein | 297 | 5% helix, 37% strand | Q91H09 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 880 | 0.78 | 0.81 | 108 | empty |
| 2 | 176 | 0.71 | 0.89 | 30 | empty |
| 3 | 67 | 0.36 | 0.77 | 20 | empty |
| 4 | 60 | 0.33 | 0.77 | 18 | empty |
| 5 | 51 | 0.31 | 0.76 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1675 Ų buried · 31 hydrogen bonds · protein-protein
Compared structures
- 3PUM · Crystal structure of P domain dimer of Norovirus VA207 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91H09
- Elsewhere: RCSB PDB 3PUM · PDBe 3PUM · UniProt Q91H09
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