Research workbench
Crystal structure of the bombyx mori low molecular weight lipoprotein 7 (BMLP7)
Analyse Crystal structure of the bombyx mori low molecular weight lipoprotein 7 (BMLP7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PUB
- Type
- protein
- Length
- 471 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30KDA protein
- UniProt
- E5EVW2
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30KDA protein | protein | 235 | 31% helix, 34% strand | E5EVW2 |
| B | 30KDA protein | protein | 236 | 33% helix, 35% strand | E5EVW2 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 148 | 0.81 | 0.97 | 24 | empty |
| 2 | 50 | 0.32 | 0.77 | 14 | empty |
| 3 | 50 | 0.30 | 0.76 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 918 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 3PUB · Crystal structure of the Bombyx mori low molecular weight lipoprotein 7 (Bmlp7) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E5EVW2
- Elsewhere: RCSB PDB 3PUB · PDBe 3PUB · UniProt E5EVW2
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